Transcript: SLC26A4-AS1:13

Basic information

LNCipedia transcript ID: SLC26A4-AS1:13 
LNCipedia gene ID: SLC26A4-AS1
Location (hg19): chr7:107297075-107302156
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3687 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000440512; ENST00000440512.1; AC078937.4-001; OTTHUMT00000337030.1
Alternative gene names: ENSG00000233705; AC078937.4; ENSG00000233705.1; OTTHUMG00000154777.2; ENSG00000233705.2; SLC26A4-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.324 non-coding 
CPAT coding probability 0.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLC26A4-AS1:13 yes no no no

Available literature

  1. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COG5-1:2
3.1 lnc-COG5-1:2
4.0 SLC26A4-AS1:13
4.1 SLC26A4-AS1:13
5.0 SLC26A4-AS1:13
5.1 SLC26A4-AS1:13
5.2 SLC26A4-AS1:13