Transcript: SLC26A4-AS1:9

Basic information

LNCipedia transcript ID: SLC26A4-AS1:9 
HGNC Gene Symbol: SLC26A4-AS1    
HGNC Full Gene Name: SLC26A4 antisense RNA 1
Ensembl Gene ID: ENSG00000233705
Ensembl Transcript ID: ENST00000626388
Location (hg19): chr7:107294417-107302509
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 666 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000626388.2
Alternative gene names: ENSG00000233705.6; SLC26A4-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -68.3113 non-coding 
CPAT coding probability 5.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLC26A4-AS1:9 yes no no no

Available literature

  1. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 SLC26A4-AS1:9
4.1 SLC26A4-AS1:9
5.0 SLC26A4-AS1:9
5.1 SLC26A4-AS1:9
5.2 SLC26A4-AS1:9