Transcript: SLC5A4-AS1:6

Basic information

LNCipedia transcript ID: SLC5A4-AS1:6 
LNCipedia gene ID: SLC5A4-AS1
Location (hg19): chr22:32601129-32609431
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 6414 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT084951
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 57.7545 non-coding 
CPAT coding probability 45.75% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SLC5A4-AS1:6 no no no no

Available literature

  1. Ren (2016), A Tumor-Specific Prognostic Long Non-Coding RNA Signature in Gastric Cancer., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RFPL3-3:2
4.0 lnc-RFPL3-3:2
4.1 lnc-RFPL3-3:2
5.0 lnc-RFPL3-3:2
5.1 SLC5A4-AS1:3
5.2 SLC5A4-AS1:6