Transcript: SLC6A1-AS1:1

Basic information

LNCipedia transcript ID: SLC6A1-AS1:1 
HGNC Gene Symbol: SLC6A1-AS1    
HGNC Full Gene Name: SLC6A1 antisense RNA 1
Ensembl Gene ID: ENSG00000232287
Ensembl Transcript ID: ENST00000414969
RefSeq ID: NR_046647
Location (hg19): chr3:11047784-11060910
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 584 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000414969.2; SLC6A1-AS1-001; OTTHUMT00000340204.2; NONHSAT087960; NR_046647; NR_046647.1
Alternative gene names: ENSG00000232287.2; SLC6A1-AS1; OTTHUMG00000155456.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -186.8515 non-coding 
CPAT coding probability 2.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLC6A1-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATP2B2-3:1
4.0 SLC6A1-AS1:1
4.1 SLC6A1-AS1:1
5.0 SLC6A1-AS1:1
5.1 SLC6A1-AS1:1
5.2 SLC6A1-AS1:1