Transcript: SLC7A11-AS1:4

Basic information

LNCipedia transcript ID: SLC7A11-AS1:4 
HGNC Gene Symbol: SLC7A11-AS1    
HGNC Full Gene Name: SLC7A11 antisense RNA 1
Ensembl Gene ID: ENSG00000250033
Ensembl Transcript ID: ENST00000512786
Location (hg19): chr4:139026549-139095731
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 690 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000512786.1; SLC7A11-AS1-003; OTTHUMT00000364384.2; NONHSAT098419
Alternative gene names: ENSG00000250033.1; SLC7A11-AS1; OTTHUMG00000161284.2; ENSG00000250033.5; ; ENST00000512786


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.9768 non-coding 
CPAT coding probability 21.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLC7A11-AS1:4 no no no no

Available literature

  1. Long (2016), Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls., Clin. Chim. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCRN4L-4:3
4.0 SLC7A11-AS1:4
4.1 SLC7A11-AS1:4
5.0 SLC7A11-AS1:4
5.1 SLC7A11-AS1:4
5.2 SLC7A11-AS1:4