Transcript: SLC8A1-AS1:1

Basic information

LNCipedia transcript ID: SLC8A1-AS1:1 
LNCipedia gene ID: SLC8A1-AS1
Location (hg19): chr2:40003494-40335843
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 965 bp
Exons: 4
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc002rrw_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -126.4744 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLC8A1-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM178-2:8
4.0 SLC8A1-AS1:1
4.1 SLC8A1-AS1:1
5.0 SLC8A1-AS1:1
5.1 SLC8A1-AS1:1
5.2 SLC8A1-AS1:1