Transcript: SLC8A1-AS1:42

Basic information

LNCipedia transcript ID: SLC8A1-AS1:42 
HGNC Gene Symbol: SLC8A1-AS1    
HGNC Full Gene Name: SLC8A1 antisense RNA 1
Ensembl Gene ID: ENSG00000227028
Ensembl Transcript ID: ENST00000631330
Location (hg19): chr2:40144703-40478872
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 200 bp
Exons: 3
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000631330.2
Alternative gene names: ENSG00000227028.6; SLC8A1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -460.6578 non-coding 
CPAT coding probability 3.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLC8A1-AS1:42 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 SLC8A1-AS1:42
5.1 SLC8A1-AS1:42
5.2 SLC8A1-AS1:42