Transcript: SLC8A1-AS1:6

Basic information

LNCipedia transcript ID: SLC8A1-AS1:6 
LNCipedia gene ID: SLC8A1-AS1
RefSeq ID: NR_038441
Location (hg19): chr2:40144774-40482349
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1002 bp
Exons: 5
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT070261; NR_038441; NR_038441.1
Alternative gene names: ; SLC8A1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -197.8911 non-coding 
CPAT coding probability 2.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLC8A1-AS1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM178-2:9
4.0 SLC8A1-AS1:6
4.1 SLC8A1-AS1:6
5.0 SLC8A1-AS1:6
5.1 SLC8A1-AS1:6
5.2 SLC8A1-AS1:6