Transcript: SLCO4A1-AS1:3

Basic information

LNCipedia transcript ID: SLCO4A1-AS1:3 
HGNC Gene Symbol: SLCO4A1-AS1    
HGNC Full Gene Name: SLCO4A1 antisense RNA 1
Ensembl Gene ID: ENSG00000232803
Ensembl Transcript ID: ENST00000433126
Location (hg19): chr20:61294383-61297974
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1420 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000433126.1; RP11-93B14.5-001; OTTHUMT00000080052.1
Alternative gene names: ENSG00000232803.1; RP11-93B14.5; OTTHUMG00000032925.1; SLCO4A1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 266.02 coding 
CPAT coding probability 64.94% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SLCO4A1-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-93B14.6.1-2:3
4.0 SLCO4A1-AS1:3
4.1 SLCO4A1-AS1:3
5.0 SLCO4A1-AS1:3
5.1 SLCO4A1-AS1:3
5.2 SLCO4A1-AS1:3