Transcript: SMAD1-AS1:2

Basic information

LNCipedia transcript ID: SMAD1-AS1:2 
HGNC Gene Symbol: SMAD1-AS1    
HGNC Full Gene Name: SMAD1 antisense RNA 1
Ensembl Gene ID: ENSG00000250902
Ensembl Transcript ID: ENST00000513542
Location (hg19): chr4:146435767-146438270
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 481 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000513542.1; RP11-301H24.4-001; OTTHUMT00000367789.1; NONHSAT098631
Alternative gene names: ENSG00000250902.1; RP11-301H24.4; OTTHUMG00000162186.1; SMAD1-AS1; ENST00000513542


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 217.8705 coding 
CPAT coding probability 17.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SMAD1-AS1:2 yes no no no

Available literature

  1. Song (2013), Integrated analysis of dysregulated lncRNA expression in fetal cardiac tissues with ventricular septal defect., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF827-5:1
4.0 SMAD1-AS1:2
4.1 SMAD1-AS1:2
5.0 SMAD1-AS1:2
5.1 SMAD1-AS1:2
5.2 SMAD1-AS1:2