Transcript: SMAD1-AS2:1

Basic information

LNCipedia transcript ID: SMAD1-AS2:1 
LNCipedia gene ID: SMAD1-AS2
RefSeq ID: NR_108077
Location (hg19): chr4:146418201-146424132
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1123 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_108077; NR_108077.1
Alternative gene names: ; SMAD1-AS2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -146.9129 non-coding 
CPAT coding probability 3.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SMAD1-AS2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF827-6:2
4.0 SMAD1-AS2:1
4.1 SMAD1-AS2:1
5.0 SMAD1-AS2:1
5.1 SMAD1-AS2:1
5.2 SMAD1-AS2:1