Transcript: SMAD5-AS1:3

Basic information

LNCipedia transcript ID: SMAD5-AS1:3 
LNCipedia gene ID: SMAD5-AS1
Location (hg19): chr5:135465188-135469335
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 579 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT103949
Alternative gene names: DAMS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -131.3359 non-coding 
CPAT coding probability 3.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SMAD5-AS1:3 yes no no no

Available literature

  1. Hughes (2014), CEBPA-regulated lncRNAs, new players in the study of acute myeloid leukemia., J Hematol Oncol
  2. Zavadil (1999), An antisense transcript to SMAD5 expressed in fetal and tumor tissues., Biochem. Biophys. Res. Commun.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRPC7-2:3
4.0 SMAD5-AS1:3
4.1 SMAD5-AS1:3
5.0 SMAD5-AS1:3
5.1 SMAD5-AS1:3
5.2 SMAD5-AS1:3