Transcript: SMAD9-IT1:1

Basic information

LNCipedia transcript ID: SMAD9-IT1:1 
HGNC Gene Symbol: SMAD9-IT1    
HGNC Full Gene Name: SMAD9 intronic transcript 1
Ensembl Gene ID: ENSG00000236711
Ensembl Transcript ID: ENST00000437983
Location (hg19): chr13:37423503-37424183
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 504 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT033214; ENST00000437983.2
Alternative gene names: ENSG00000236711.2; SMAD9-AS1; SMAD9-IT1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -25.4984 non-coding 
CPAT coding probability 0.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SMAD9-IT1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ALG5-5:1
4.0 SMAD9-IT1:1
4.1 SMAD9-IT1:1
5.0 SMAD9-IT1:1
5.1 SMAD9-IT1:1
5.2 SMAD9-IT1:1