Transcript: SMARCA5-AS1:3

Basic information

LNCipedia transcript ID: SMARCA5-AS1:3 
LNCipedia gene ID: SMARCA5-AS1
Location (hg19): chr4:144434625-144435807
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 964 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000245112.2|ENST00000500800.2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -281.7333 non-coding 
CPAT coding probability 55.17% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SMARCA5-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SMARCA5-AS1:3
5.0 SMARCA5-AS1:3
5.1 SMARCA5-AS1:3
5.2 SMARCA5-AS1:3