Transcript: SMC2-AS1:4

Basic information

LNCipedia transcript ID: SMC2-AS1:4 
LNCipedia gene ID: SMC2-AS1
Location (hg19): chr9:106848550-106849375
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 328 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00016850
Alternative gene names: XLOC_007813; linc-GRIN3A-4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -134.5308 non-coding 
CPAT coding probability 0.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SMC2-AS1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OR13C4-1:3
3.1 lnc-OR13C4-1:3
4.0 SMC2-AS1:4
4.1 SMC2-AS1:4
5.0 SMC2-AS1:4
5.1 SMC2-AS1:4
5.2 SMC2-AS1:4