Transcript: SMG7-AS1:3

Basic information

LNCipedia transcript ID: SMG7-AS1:3 
LNCipedia gene ID: SMG7-AS1
Location (hg19): chr1:183430011-183441117
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2454 bp
Exons: 5
Sources: NONCODE v4; Refseq - Dec 2014
Alternative transcript names: NONHSAT008355; NR_040063
Alternative gene names: DKFZP564C196


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.1601 non-coding 
CPAT coding probability 57.80% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SMG7-AS1:3 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NMNAT2-2:5
4.0 SMG7-AS1:3
4.1 SMG7-AS1:3
5.0 SMG7-AS1:3
5.1 SMG7-AS1:3
5.2 SMG7-AS1:3