Transcript: SMG7-AS1:4

Basic information

LNCipedia transcript ID: SMG7-AS1:4 
HGNC Gene Symbol: SMG7-AS1    
HGNC Full Gene Name: SMG7 antisense RNA 1
Ensembl Gene ID: ENSG00000232860
Ensembl Transcript ID: ENST00000421703
Location (hg19): chr1:183430009-183440881
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2220 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000421703; ENST00000421703.1; RP11-74N20.1-001; OTTHUMT00000086408.1; ENST00000421703.5
Alternative gene names: ENSG00000232860; RP11-74N20.1; ENSG00000232860.2; OTTHUMG00000035521.3; ENSG00000232860.3; SMG7-AS1; ENSG00000232860.7; DKFZP564C196


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.1601 non-coding 
CPAT coding probability 30.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SMG7-AS1:4 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NMNAT2-2:2
3.1 lnc-NMNAT2-2:2
4.0 SMG7-AS1:4
4.1 SMG7-AS1:4
5.0 SMG7-AS1:4
5.1 SMG7-AS1:4
5.2 SMG7-AS1:4