Transcript: SMG7-AS1:7

Basic information

LNCipedia transcript ID: SMG7-AS1:7 
LNCipedia gene ID: SMG7-AS1
Location (hg19): chr1:183428793-183441400
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3833 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000232860.3|MICT00000026344.1
Alternative gene names: DKFZP564C196


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 6.9541 non-coding 
CPAT coding probability 39.21% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SMG7-AS1:7 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SMG7-AS1:7
5.0 SMG7-AS1:7
5.1 SMG7-AS1:7
5.2 SMG7-AS1:7