Transcript: SMILR:10

Basic information

LNCipedia transcript ID: SMILR:10 
LNCipedia gene ID: SMILR
Location (hg19): chr8:122966847-123139423
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 822 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT128484
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.4771 non-coding 
CPAT coding probability 0.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SMILR:10 no no no no

Available literature

  1. Ballantyne (2016), Smooth Muscle Enriched Long Noncoding RNA (SMILR) Regulates Cell Proliferation., Circulation


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HAS2-3:2
4.0 lnc-HAS2-3:2
4.1 lnc-RP11-973F15.1.1-5:4
5.0 lnc-RP11-973F15.1.1-5:4
5.1 SMILR:6
5.2 SMILR:10