Transcript: SMILR:7

Basic information

LNCipedia transcript ID: SMILR:7 
LNCipedia gene ID: SMILR
Location (hg19): chr8:122966168-123440796
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1960 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000254303.1|ENCT00000439819.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 6.2534 non-coding 
CPAT coding probability 19.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SMILR:7 no no no no

Available literature

  1. Ballantyne (2016), Smooth Muscle Enriched Long Noncoding RNA (SMILR) Regulates Cell Proliferation., Circulation


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RP11-973F15.1.1-5:2
5.0 lnc-RP11-973F15.1.1-5:2
5.1 SMILR:3
5.2 SMILR:7