Transcript: SMILR:8

Basic information

LNCipedia transcript ID: SMILR:8 
HGNC Gene Symbol: SMILR    
HGNC Full Gene Name: smooth muscle induced lncRNA, enhancer of proliferation
Ensembl Gene ID: ENSG00000255364
Ensembl Transcript ID: ENST00000533992
Location (hg19): chr8:123426571-123440790
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 553 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000533992; ENST00000533992.1; RP11-94A24.1-001; OTTHUMT00000382020.1; NONHSAT128487
Alternative gene names: ENSG00000255364; RP11-94A24.1; ENSG00000255364.1; OTTHUMG00000165130.1; SMILR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.6961 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SMILR:8 no no no no

Available literature

  1. Ballantyne (2016), Smooth Muscle Enriched Long Noncoding RNA (SMILR) Regulates Cell Proliferation., Circulation


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-973F15.1.1-5:1
3.1 lnc-RP11-973F15.1.1-5:1
4.0 lnc-RP11-973F15.1.1-5:1
4.1 lnc-RP11-973F15.1.1-5:1
5.0 lnc-RP11-973F15.1.1-5:1
5.1 SMILR:4
5.2 SMILR:8