Transcript: SMIM15-AS1:18

Basic information

LNCipedia transcript ID: SMIM15-AS1:18 
HGNC Gene Symbol: SMIM15-AS1    
HGNC Full Gene Name: SMIM15 antisense RNA 1
Ensembl Gene ID: ENSG00000251279
Ensembl Transcript ID: ENST00000506902
Location (hg19): chr5:60457897-60527867
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 796 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000506902.1; CTC-436P18.1-001; OTTHUMT00000368079.1; NONHSAT101657
Alternative gene names: ENSG00000251279.1; CTC-436P18.1; OTTHUMG00000162242.1; SMIM15-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.2834 non-coding 
CPAT coding probability 2.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SMIM15-AS1:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NDUFAF2-2:1
4.0 lnc-NDUFAF2-2:1
4.1 lnc-NDUFAF2-2:1
5.0 lnc-NDUFAF2-2:1
5.1 SMIM15-AS1:2
5.2 SMIM15-AS1:18