Transcript: SNAI3-AS1:21

Basic information

LNCipedia transcript ID: SNAI3-AS1:21 
LNCipedia gene ID: SNAI3-AS1
Location (hg19): chr16:88729773-88744159
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4705 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000260630.2|MICT00000138274.1
Alternative gene names: MGC23284


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 34.0483 non-coding 
CPAT coding probability 13.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNAI3-AS1:21 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SNAI3-AS1:21
5.0 SNAI3-AS1:21
5.1 SNAI3-AS1:21
5.2 SNAI3-AS1:21