Transcript: SNAI3-AS1:5

Basic information

LNCipedia transcript ID: SNAI3-AS1:5 
LNCipedia gene ID: SNAI3-AS1
Location (hg19): chr16:88729781-88743312
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2049 bp
Exons: 5
Sources: NONCODE v4
Alternative transcript names: NONHSAT144403
Alternative gene names: MGC23284


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.5902 non-coding 
CPAT coding probability 25.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNAI3-AS1:5 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTU2-6:9
4.0 SNAI3-AS1:5
4.1 SNAI3-AS1:5
5.0 SNAI3-AS1:5
5.1 SNAI3-AS1:5
5.2 SNAI3-AS1:5