Transcript: SNAP25-AS1:19

Basic information

LNCipedia transcript ID: SNAP25-AS1:19 
LNCipedia gene ID: SNAP25-AS1
Location (hg19): chr20:10081815-10200149
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3736 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000227906.3|FTMT27700012181.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -34.9306 non-coding 
CPAT coding probability 2.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNAP25-AS1:19 no no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SNAP25-AS1:19
5.0 SNAP25-AS1:19
5.1 SNAP25-AS1:19
5.2 SNAP25-AS1:19