Transcript: SND1-IT1:5

Basic information

LNCipedia transcript ID: SND1-IT1:5 
LNCipedia gene ID: SND1-IT1
Ensembl Gene ID: ENSG00000279078
Ensembl Transcript ID: ENST00000623342
Location (hg19): chr7:127637650-127640130
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2481 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000623342.1
Alternative gene names: ENSG00000279078.1; SND1-IT1; NAG8; NSG-X


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -128.2979 non-coding 
CPAT coding probability 9.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SND1-IT1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 SND1-IT1:5
4.1 SND1-IT1:5
5.0 SND1-IT1:5
5.1 SND1-IT1:5
5.2 SND1-IT1:5