Transcript: SNHG15:25

Basic information

LNCipedia transcript ID: SNHG15:25 
LNCipedia gene ID: SNHG15
Location (hg19): chr7:45017433-45026252
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 6819 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000232956.4|ENCT00000411520.1
Alternative gene names: FLJ38860; MYO1GUT; Linc-Myo1g


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 343.2387 coding 
CPAT coding probability 2.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SNHG15:25 yes no no no

Available literature

  1. Chen (2016), Upregulated expression of long noncoding RNA SNHG15 promotes cell proliferation and invasion through regulates MMP2/MMP9 in patients with GC., Tumour Biol.
  2. Tani (2015), Development of cytotoxicity-sensitive human cells using overexpression of long non-coding RNAs., J. Biosci. Bioeng.
  3. Hart (2014), MYC regulates the non-coding transcriptome., Oncotarget
  4. Tani (2014), Long non-coding RNAs as surrogate indicators for chemical stress responses in human-induced pluripotent stem cells., PLoS ONE
  5. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  6. Tani (2013), Identification of short-lived long non-coding RNAs as surrogate indicators for chemical stress response., Biochem. Biophys. Res. Commun.
  7. Ota (2004), Complete sequencing and characterization of 21,243 full-length human cDNAs., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SNHG15:25
5.0 SNHG15:25
5.1 SNHG15:25
5.2 SNHG15:25