Transcript: SNHG17:11

Basic information

LNCipedia transcript ID: SNHG17:11 
LNCipedia gene ID: SNHG17
Location (hg19): chr20:37059423-37063977
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 764 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000424235.1
Alternative gene names: ENSG00000196756.11; SNHG17;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -89.375 non-coding 
CPAT coding probability 0.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNHG17:11 no no no no

Available literature

  1. Zhao (2014), Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications., Sci Rep
  2. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 SNHG17:11
4.1 SNHG17:11
5.0 SNHG17:11
5.1 SNHG17:11
5.2 SNHG17:11