Transcript: SNHG17:13

Basic information

LNCipedia transcript ID: SNHG17:13 
HGNC Gene Symbol: SNHG17    
HGNC Full Gene Name: small nucleolar RNA host gene 17
Ensembl Gene ID: ENSG00000196756
Ensembl Transcript ID: ENST00000456953
Location (hg19): chr20:37055103-37063976
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 546 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000456953; ENST00000456953.1; RP4-564F22.2-002; OTTHUMT00000079162.1; NONHSAT147166; ENST00000456953.5
Alternative gene names: ENSG00000196756; RP4-564F22.2; ENSG00000196756.5; OTTHUMG00000032442.1; ENSG00000196756.7; SNHG17; ; ENSG00000196756.11


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -89.375 non-coding 
CPAT coding probability 4.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SNHG17:13 no no no no

Available literature

  1. Zhao (2014), Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications., Sci Rep
  2. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIAA1755-3:4
3.1 lnc-KIAA1755-5:3
4.0 SNHG17:13
4.1 SNHG17:13
5.0 SNHG17:13
5.1 SNHG17:13
5.2 SNHG17:13