Transcript: SNHG17:14

Basic information

LNCipedia transcript ID: SNHG17:14 
LNCipedia gene ID: SNHG17
Location (hg19): chr20:37062993-37063976
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 584 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028384; NONHSAT079670
Alternative gene names: XLOC_013739; linc-KIAA1755-4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -89.375 non-coding 
CPAT coding probability 2.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SNHG17:14 no no no no

Available literature

  1. Zhao (2014), Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications., Sci Rep
  2. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIAA1755-3:5
3.1 lnc-KIAA1755-5:5
4.0 SNHG17:14
4.1 SNHG17:14
5.0 SNHG17:14
5.1 SNHG17:14
5.2 SNHG17:14