Transcript: SNHG17:17

Basic information

LNCipedia transcript ID: SNHG17:17 
LNCipedia gene ID: SNHG17
Location (hg19): chr20:37049239-37063962
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 805 bp
Exons: 6
Sources: NONCODE v4
Alternative transcript names: NONHSAT079658
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -144.6955 non-coding 
CPAT coding probability 9.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNHG17:17 no no no no

Available literature

  1. Zhao (2014), Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications., Sci Rep
  2. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA1755-5:15
4.0 SNHG17:17
4.1 SNHG17:17
5.0 SNHG17:17
5.1 SNHG17:17
5.2 SNHG17:17