Transcript: SNHG17:22

Basic information

LNCipedia transcript ID: SNHG17:22 
LNCipedia gene ID: SNHG17
Location (hg19): chr20:37049532-37059692
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 261 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000435718; ENST00000435718.1; RP4-564F22.2-004; OTTHUMT00000079164.1; NONHSAT079662
Alternative gene names: ENSG00000196756; RP4-564F22.2; ENSG00000196756.5; OTTHUMG00000032442.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -249.0731 non-coding 
CPAT coding probability 20.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNHG17:22 no no no no

Available literature

  1. Zhao (2014), Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications., Sci Rep
  2. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIAA1755-3:9
3.1 lnc-KIAA1755-5:9
4.0 SNHG17:22
4.1 SNHG17:22
5.0 SNHG17:22
5.1 SNHG17:22
5.2 SNHG17:22