Transcript: SNHG17:25

Basic information

LNCipedia transcript ID: SNHG17:25 
LNCipedia gene ID: SNHG17
Location (hg19): chr20:37034660-37045444
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2002 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00027888
Alternative gene names: XLOC_013737; linc-KIAA1755-3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.6723 non-coding 
CPAT coding probability 3.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNHG17:25 no no no no

Available literature

  1. Zhao (2014), Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications., Sci Rep
  2. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIAA1755-1:1
3.1 lnc-KIAA1755-2:2
4.0 SNHG17:25
4.1 SNHG17:25
5.0 SNHG17:25
5.1 SNHG17:25
5.2 SNHG17:25