Transcript: SNHG18:1

Basic information

LNCipedia transcript ID: SNHG18:1 
HGNC Gene Symbol: SNHG18    
HGNC Full Gene Name: small nucleolar RNA host gene 18
Ensembl Gene ID: ENSG00000250786
Ensembl Transcript ID: ENST00000508179
Location (hg19): chr5:9546312-9550721
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1799 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000508179; ENST00000508179.1; CTD-2001E22.2-001; OTTHUMT00000366000.1; NONHSAT100367
Alternative gene names: ENSG00000250786; CTD-2001E22.2; ENSG00000250786.1; OTTHUMG00000161753.1; SNHG18;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -97.9989 non-coding 
CPAT coding probability 5.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNHG18:1 no no no no

Available literature

  1. Zheng (2016), Upregulation of Long Noncoding RNA Small Nucleolar RNA Host Gene 18 Promotes Radioresistance of Glioma by Repressing Semaphorin 5A., Int. J. Radiat. Oncol. Biol. Phys.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCT5-3:1
3.1 lnc-CCT5-4:1
4.0 SNHG18:1
4.1 SNHG18:1
5.0 SNHG18:1
5.1 SNHG18:1
5.2 SNHG18:1