Transcript: SNHG18:2

Basic information

LNCipedia transcript ID: SNHG18:2 
LNCipedia gene ID: SNHG18
Location (hg19): chr5:9546312-9550409
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1487 bp
Exons: 3
Sources: Refseq - Dec 2014
Alternative transcript names: NR_045196
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -182.7509 non-coding 
CPAT coding probability 5.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNHG18:2 no no no no

Available literature

  1. Zheng (2016), Upregulation of Long Noncoding RNA Small Nucleolar RNA Host Gene 18 Promotes Radioresistance of Glioma by Repressing Semaphorin 5A., Int. J. Radiat. Oncol. Biol. Phys.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCT5-4:3
4.0 SNHG18:2
4.1 SNHG18:2
5.0 SNHG18:2
5.1 SNHG18:2
5.2 SNHG18:2