Transcript: SNHG21:17

Basic information

LNCipedia transcript ID: SNHG21:17 
LNCipedia gene ID: SNHG21
Ensembl Gene ID: ENSG00000252690
Ensembl Transcript ID: ENST00000607520
Location (hg19): chr15:83421636-83425960
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4325 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607520.1
Alternative gene names: ENSG00000252690.2; SCARNA15; ENSG00000252690.3; SCARNA15HG; FSD2-AS1; RP11-752G15.6; AC105339.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.0038 non-coding 
CPAT coding probability 1.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNHG21:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WHAMM-2:15
4.0 SNHG21:17
4.1 SNHG21:17
5.0 SNHG21:17
5.1 SNHG21:17
5.2 SNHG21:17