Transcript: SNHG21:3

Basic information

LNCipedia transcript ID: SNHG21:3 
HGNC Gene Symbol: SNHG21    
HGNC Full Gene Name: small nucleolar RNA host gene 21
Ensembl Gene ID: ENSG00000250988
Ensembl Transcript ID: ENST00000544685
Location (hg19): chr15:83419316-83423689
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 594 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000544685.2; RP11-752G15.6-001; OTTHUMT00000418405.1
Alternative gene names: ENSG00000250988.3; RP11-752G15.6; OTTHUMG00000172404.1; ENSG00000250988.7; SNHG21; SCARNA15HG; FSD2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 2 non-coding 
PhyloCSF score -118.9862 non-coding 
CPAT coding probability 2.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SNHG21:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WHAMM-2:1
4.0 SNHG21:3
4.1 SNHG21:3
5.0 SNHG21:3
5.1 SNHG21:3
5.2 SNHG21:3