Transcript: SNHG7:2

Basic information

LNCipedia transcript ID: SNHG7:2 
HGNC Gene Symbol: SNHG7    
HGNC Full Gene Name: small nucleolar RNA host gene 7
Ensembl Gene ID: ENSG00000233016
Ensembl Transcript ID: ENST00000416970
Location (hg19): chr9:139619110-139622636
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 789 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000416970.1; SNHG7-003; OTTHUMT00000055148.1; ENST00000416970.5
Alternative gene names: ENSG00000233016.1; SNHG7; OTTHUMG00000020949.1; ENSG00000233016.2; ENSG00000233016.6; MGC16037; NCRNA00061


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.8234 non-coding 
CPAT coding probability 7.69% non-coding 
Bazzini small ORFs 1 coding 
covF1Prop0.215384615
seqAAMGARAAEEAPLVCPLVERALPALRGFQPGSFGKPGRLLTGDDTCVGCWHSCYLTREGGDFACDGLPV
orfFrame8.103108032

In stringent set: no

Locus conservation

Locus conservation?
SNHG7:2 no no no no

Available literature

  1. She (2016), lncRNA-SNHG7 promotes the proliferation, migration and invasion and inhibits apoptosis of lung cancer cells by enhancing the FAIM2 expression., Oncol. Rep.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LCN6-1:1
4.0 SNHG7:2
4.1 SNHG7:2
5.0 SNHG7:2
5.1 SNHG7:2
5.2 SNHG7:2