Transcript: SNHG8:4

Basic information

LNCipedia transcript ID: SNHG8:4 
HGNC Gene Symbol: SNHG8    
HGNC Full Gene Name: small nucleolar RNA host gene 8
Ensembl Gene ID: ENSG00000269893
Ensembl Transcript ID: ENST00000602483
Location (hg19): chr4:119199910-119200975
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 309 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT097974; ENST00000602483.1; ENST00000602483.5
Alternative gene names: ENSG00000269893.2; SNHG8; ENSG00000269893.6; NCRNA00060; LINC00060


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 2 non-coding 
PhyloCSF score -227.0603 non-coding 
CPAT coding probability 2.98% non-coding 
Bazzini small ORFs 1 coding 
seqAAMDDGNIRLSRNPSGNGRSLFSIRQWTYRSWGNGCSE
orfFrame8.803113847
covF1Prop0.323529412

In stringent set: no

Locus conservation

Locus conservation?
SNHG8:4 no no no no

Available literature

  1. Huang (2016), SNHG8 is identified as a key regulator of epstein-barr virus(EBV)-associated gastric cancer by an integrative analysis of lncRNA and mRNA expression., Oncotarget
  2. Wright (2013), Long non coding RNAs (lncRNAs) are dysregulated in Malignant Pleural Mesothelioma (MPM)., PLoS ONE
  3. Kiss (2004), Human box H/ACA pseudouridylation guide RNA machinery., Mol. Cell. Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NDST3-1:4
4.0 SNHG8:4
4.1 SNHG8:4
5.0 SNHG8:4
5.1 SNHG8:4
5.2 SNHG8:4