Transcript: SNHG8:6

Basic information

LNCipedia transcript ID: SNHG8:6 
LNCipedia gene ID: SNHG8
Location (hg19): chr4:119199914-119200974
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 618 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000500560
Alternative gene names: ENSG00000246493; SNHG8; NCRNA00060; LINC00060


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 3 non-coding 
PhyloCSF score -174.729 non-coding 
CPAT coding probability 1.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SNHG8:6 no no no no

Available literature

  1. Huang (2016), SNHG8 is identified as a key regulator of epstein-barr virus(EBV)-associated gastric cancer by an integrative analysis of lncRNA and mRNA expression., Oncotarget
  2. Wright (2013), Long non coding RNAs (lncRNAs) are dysregulated in Malignant Pleural Mesothelioma (MPM)., PLoS ONE
  3. Kiss (2004), Human box H/ACA pseudouridylation guide RNA machinery., Mol. Cell. Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NDST3-1:1
3.1 lnc-NDST3-1:1
4.0 SNHG8:6
4.1 SNHG8:6
5.0 SNHG8:6
5.1 SNHG8:6
5.2 SNHG8:6