Transcript: SOCS2-AS1:15

Basic information

LNCipedia transcript ID: SOCS2-AS1:15 
LNCipedia gene ID: SOCS2-AS1
Location (hg19): chr12:93930593-93965196
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3435 bp
Exons: 6
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000246985.3|MICT00000084201.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 16.6799 non-coding 
CPAT coding probability 33.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SOCS2-AS1:15 yes no no no

Available literature

  1. Romero (2014), Transcriptome interrogation of human myometrium identifies differentially expressed sense-antisense pairs of protein-coding and long non-coding RNA genes in spontaneous labor at term., J. Matern. Fetal. Neonatal. Med.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SOCS2-AS1:15
5.0 SOCS2-AS1:15
5.1 SOCS2-AS1:15
5.2 SOCS2-AS1:15