Transcript: SOCS2-AS1:6

Basic information

LNCipedia transcript ID: SOCS2-AS1:6 
LNCipedia gene ID: SOCS2-AS1
Location (hg19): chr12:93960515-93965066
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 354 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000549723; ENST00000549723.1; RP11-887P2.1-005; OTTHUMT00000407730.1; NONHSAT029959
Alternative gene names: ENSG00000246985; RP11-887P2.1; ENSG00000246985.2; OTTHUMG00000170159.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.3548 non-coding 
CPAT coding probability 1.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SOCS2-AS1:6 yes no no no

Available literature

  1. Romero (2014), Transcriptome interrogation of human myometrium identifies differentially expressed sense-antisense pairs of protein-coding and long non-coding RNA genes in spontaneous labor at term., J. Matern. Fetal. Neonatal. Med.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UBE2N-1:5
3.1 lnc-UBE2N-2:5
4.0 SOCS2-AS1:6
4.1 SOCS2-AS1:6
5.0 SOCS2-AS1:6
5.1 SOCS2-AS1:6
5.2 SOCS2-AS1:6