Transcript: SOD2-OT1:5

Basic information

LNCipedia transcript ID: SOD2-OT1:5 
LNCipedia gene ID: SOD2-OT1
Location (hg19): chr6:160181291-160183364
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1717 bp
Exons: 2
Sources: Refseq - Dec 2014
Alternative transcript names: NR_037166
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.5361 non-coding 
CPAT coding probability 11.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SOD2-OT1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TCP1-1:1
4.0 lnc-TCP1-1:1
4.1 lnc-TCP1-1:1
5.0 lnc-TCP1-1:1
5.1 SOD2-OT1:3
5.2 SOD2-OT1:5