Transcript: SORCS3-AS1:1

Basic information

LNCipedia transcript ID: SORCS3-AS1:1 
LNCipedia gene ID: SORCS3-AS1
Location (hg19): chr10:106424368-106425974
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1520 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000449805.1; RP11-483B5.3-001; OTTHUMT00000050220.1; NONHSAT016243
Alternative gene names: ENSG00000226387.1; RP11-483B5.3; OTTHUMG00000019010.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -148.7882 non-coding 
CPAT coding probability 9.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SORCS3-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ITPRIP-3:1
4.0 SORCS3-AS1:1
4.1 SORCS3-AS1:1
5.0 SORCS3-AS1:1
5.1 SORCS3-AS1:1
5.2 SORCS3-AS1:1