Transcript: SORCS3-AS1:4

Basic information

LNCipedia transcript ID: SORCS3-AS1:4 
HGNC Gene Symbol: SORCS3-AS1    
HGNC Full Gene Name: SORCS3 antisense RNA 1
Ensembl Gene ID: ENSG00000226387
Ensembl Transcript ID: ENST00000449805
Location (hg19): chr10:106424366-106425958
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1278 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT016242; ENST00000449805.2
Alternative gene names: ENSG00000226387.2; SORCS3-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -148.7882 non-coding 
CPAT coding probability 1.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SORCS3-AS1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ITPRIP-3:4
4.0 SORCS3-AS1:4
4.1 SORCS3-AS1:4
5.0 SORCS3-AS1:4
5.1 SORCS3-AS1:4
5.2 SORCS3-AS1:4