Transcript: SOX1-OT:23
Basic information
LNCipedia transcript ID: SOX1-OT:23
HGNC Gene Symbol: SOX1-OT
HGNC Full Gene Name:
SOX1 overlapping transcript
Ensembl Gene ID:
ENSG00000224243
Ensembl Transcript ID:
ENST00000421423
RefSeq ID:
NR_120394
Location (hg19): chr13:112761433-112762329
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 545 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00021601; ENST00000421423; ENST00000421423.1; LINC00403-001; OTTHUMT00000045818.1; NR_120394; NR_120394.1
Alternative gene names: XLOC_010504; linc-C13orf28-4; ENSG00000224243; RP11-450H6.1; ENSG00000224243.1; LINC00403; OTTHUMG00000017363.1; ; SOX1-OT
RNA sequence:
Structure:
Protein coding potential
In stringent set: yes
Locus conservation
| Locus conservation? |  |
 |
 |
 |
|---|---|---|---|---|
| SOX1-OT:23 | no | no | no | no |
Available literature
- Ahmad (2017), Expression of a SOX1 overlapping transcript in neural differentiation and cancer models., Cell. Mol. Life Sci.
- Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.
LNCipedia transcript ID history
| LNCipedia version | LNCipedia transcript ID |
|---|---|
| 1.3 | lnc-SOX1-1:2 |
| 3.1 | lnc-SOX1-2:2 |
| 4.0 | LINC00403:5 |
| 4.1 | LINC00403:5 |
| 5.0 | LINC00403:5 |
| 5.1 | SOX1-OT:13 |
| 5.2 | SOX1-OT:23 |