Transcript: SOX5-AS1:12

Basic information

LNCipedia transcript ID: SOX5-AS1:12 
LNCipedia gene ID: SOX5-AS1
Location (hg19): chr12:24380682-24407838
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 485 bp
Exons: 5
Sources: NONCODE v4
Alternative transcript names: NONHSAT027317
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -185.3465 non-coding 
CPAT coding probability 3.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SOX5-AS1:12 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRMP-5:4
4.0 lnc-LRMP-5:4
4.1 lnc-LRMP-5:4
5.0 lnc-LRMP-5:4
5.1 SOX5-AS1:6
5.2 SOX5-AS1:12