Transcript: SPART-AS1:8

Basic information

LNCipedia transcript ID: SPART-AS1:8 
LNCipedia gene ID: SPART-AS1
RefSeq ID: NR_045180
Location (hg19): chr13:36920568-36943872
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 777 bp
Exons: 6
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_045180; NR_045180.1
Alternative gene names: ; SPG20-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -61.6332 non-coding 
CPAT coding probability 7.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SPART-AS1:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPG20OS-1:2
4.0 SPG20-AS1:2
4.1 SPG20-AS1:2
5.0 SPG20-AS1:2
5.1 SPART-AS1:3
5.2 SPART-AS1:8