Transcript: SPATA42:2

Basic information

LNCipedia transcript ID: SPATA42:2 
LNCipedia gene ID: SPATA42
RefSeq ID: NR_049777
Location (hg19): chr1:109399839-109400962
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 468 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT005004; NR_049777; NR_049777.1
Alternative gene names: SRG7; AKNAD1-AS1; SPATA42


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.8472 non-coding 
CPAT coding probability 0.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SPATA42:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPSM2-1:3
4.0 SPATA42:2
4.1 SPATA42:2
5.0 SPATA42:2
5.1 SPATA42:2
5.2 SPATA42:2