Transcript: SPATA8-AS1:3

Basic information

LNCipedia transcript ID: SPATA8-AS1:3 
HGNC Gene Symbol: SPATA8-AS1    
HGNC Full Gene Name: SPATA8 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000259282
Ensembl Transcript ID: ENST00000560888
RefSeq ID: NR_102754
Location (hg19): chr15:97315235-97324884
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 392 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000560888.1; RP11-143C19.1-002; OTTHUMT00000416569.1; NONHSAT050379; NR_102754; ENST00000560888.5; NR_102754.1
Alternative gene names: ENSG00000259282.1; RP11-143C19.1; OTTHUMG00000172033.1; SPATA8-AS1; ENSG00000259282.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -659.9592 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SPATA8-AS1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC016251.1-6:2
4.0 SPATA8-AS1:3
4.1 SPATA8-AS1:3
5.0 SPATA8-AS1:3
5.1 SPATA8-AS1:3
5.2 SPATA8-AS1:3